From c876602ea4d334a8984c6377d523fd718af4e4e0 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sun, 19 Jan 2020 02:22:06 -0600
Subject: [PATCH] Fix endsManual log
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index b8de5d8..4096ebd 100755
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -137,7 +137,7 @@ process parseMetadata {
# Manually get endness
endsManual=\$(python3 ${script_parseMeta} -r ${repRID} -m "${fileMeta}" -p endsManual)
- echo "LOG: endedness manually detected: \${ends}" >>${repRID}.parseMetadata.err
+ echo "LOG: endedness manually detected: \${endsManual}" >>${repRID}.parseMetadata.err
if [ \${endsMeta} == "uk" ]
--
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