diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index b8de5d8a280b290161c207528655cbe507c2ebf6..4096ebdd86ccced760d813b40d9d2fa866d75bed 100755 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -137,7 +137,7 @@ process parseMetadata { # Manually get endness endsManual=\$(python3 ${script_parseMeta} -r ${repRID} -m "${fileMeta}" -p endsManual) - echo "LOG: endedness manually detected: \${ends}" >>${repRID}.parseMetadata.err + echo "LOG: endedness manually detected: \${endsManual}" >>${repRID}.parseMetadata.err if [ \${endsMeta} == "uk" ]