diff --git a/workflow/conf/multiqc_config.yaml b/workflow/conf/multiqc_config.yaml index 8a91a75b919a858cdb43c27d0349290bef04b967..ed1375aed47a454394029e5057695b0c15babd8c 100644 --- a/workflow/conf/multiqc_config.yaml +++ b/workflow/conf/multiqc_config.yaml @@ -74,10 +74,14 @@ custom_data: scale: false format: '{}' headers: - Session - Session ID - Pipeline Version - Input + Session: + description: '' + Session ID: + description: 'Nextflow session ID' + Pipeline Version: + description: 'BICF pipeline version' + Input: + description: 'Input overrides' rid: file_format: 'tsv' section_name: 'RID' @@ -88,10 +92,14 @@ custom_data: scale: false format: '{}' headers: - Replicate - Replicate RID - Experiment RID - Study RID + Replicate: + description: '' + Replicate RID: + description: 'Replicate RID' + Experiment RID: + description: 'Experiment RID' + Study RID: + description: 'Study RID' meta: file_format: 'tsv' section_name: 'Metadata' @@ -102,30 +110,43 @@ custom_data: scale: false format: '{:,.0f}' headers: - Source - Species - Ends - Stranded - Spike-in - Raw Reads - Assigned Reads - Median Read Length - Median TIN - Pipeline Version + Source: + description: 'Metadata source' + Species: + description: 'Species' + Ends: + description: 'Single or paired end sequencing' + Stranded: + description: 'Stranded (forward/reverse) or unstranded library prep' + Spike-in: + description: 'ERCC spike in' + Raw Reads: + description: 'Number of reads of the sequencer' + Assigned Reads: + description: 'Final reads after fintering' + Median Read Length: + description: 'Average read length' + Median TIN: + description: 'Average transcript integrity number' + ref: file_format: 'tsv' section_name: 'Reference' - description: 'This is the referenec version information' + description: 'This is the reference version information' plot_type: 'table' pconfig: id: 'ref' scale: false format: '{}' headers: - Species - Genome Reference Consortium Build - Genome Reference Consortium Patch - GENCODE Annotation Release" + Species: + description: 'Reference species' + Genome Reference Consortium Build: + description: 'Reference source build' + Genome Reference Consortium Patch: + description: 'Reference source patch version' + GENCODE Annotation Release: + description: 'Annotation release version' tin: file_format: 'tsv' section_name: 'TIN' @@ -135,16 +156,16 @@ custom_data: id: 'tin' headers: chrom - 0 - 9 - 10 - 19 - 20 - 29 - 30 - 39 - 40 - 49 - 50 - 59 - 60 - 69 - 70 - 79 - 80 - 89 - 90 - 99 + 1 - 10 + 11 - 20 + 21 - 30 + 31 - 40 + 41 - 50 + 51 - 60 + 61 - 70 + 71 - 80 + 81 - 90 + 91 - 100 sp: run: @@ -156,4 +177,4 @@ sp: ref: fn: 'reference.tsv' tin: - fn: '*.tin.hist.tsv' + fn: '*_tin.hist.tsv'