diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 80623ef7096d9edf451cec5e074d8ef421514d5f..7c306463db48b35e0f78d1ba31d46960686b01c9 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -441,7 +441,7 @@ uploadOutputBag: cookie=$(cat credential.json | grep -A 1 '\"staging.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') && cookie=${cookie:11:-1} && loc=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host staging.gudmap.org put ./test.txt /hatrac/resources/rnaseq/pipeline/output_bag/TEST/test.txt --parents) && - rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/upload_output_bag.py -e 17-BTG4 -f test.txt -l ${loc} -s ${md5} -b ${size} -n 'This is a test output bag' -o staging.gudmap.org -c ${cookie}) && + rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/upload_output_bag.py -e 17-BVDJ -f test.txt -l ${loc} -s ${md5} -b ${size} -n 'This is a test output bag' -o staging.gudmap.org -c ${cookie}) && echo ${rid} test output bag created else rid=$(echo ${exist} | grep -o '\"RID\":\".*\",\"RCT') &&