From c076037b0b0a8b783116fc1f35676e2d037e737c Mon Sep 17 00:00:00 2001 From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu> Date: Thu, 12 Mar 2020 20:27:45 -0500 Subject: [PATCH] Fix bai in align unit ci pytest --- workflow/tests/test_alignReads.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/workflow/tests/test_alignReads.py b/workflow/tests/test_alignReads.py index d95e63a..fb5316c 100644 --- a/workflow/tests/test_alignReads.py +++ b/workflow/tests/test_alignReads.py @@ -13,11 +13,11 @@ data_output_path = os.path.dirname(os.path.abspath(__file__)) + \ def test_alignData_se(): assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.unal.gz')) assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.bam')) - assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.bai')) + assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.bam.bai')) @pytest.mark.alignData def test_alignData_pe(): assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.pe.unal.gz')) assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.pe.sorted.bam')) - assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.pe.sorted.bai')) \ No newline at end of file + assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.pe.bam.sorted.bai')) -- GitLab