diff --git a/workflow/scripts/bdbagFetch.sh b/workflow/scripts/bdbagFetch.sh index d009ed8831f25993a97d32027f4f754255fbcc5b..a5ee2629f395cc9ca3d899042c6e2a079545740d 100644 --- a/workflow/scripts/bdbagFetch.sh +++ b/workflow/scripts/bdbagFetch.sh @@ -3,9 +3,9 @@ if [ -z "${3}" ] then bdbag --resolve-fetch all --fetch-filter filename\$*fastq.gz ${1} - for i in $(find */ -name "*.R*.fastq.gz") + for i in $(find */ -name "*R*.fastq.gz") do - path=${2}$(echo ${i##*/} | grep -o "\.R.\.fastq\.gz") + path=16-TA16$(echo ${i##*/} | grep -o "\.R.\.fastq\.gz") cp ${i} ./${path} done elif [ "${3}" == "TEST" ]