diff --git a/rna-seq.nf b/rna-seq.nf index 478b742f54bea916b5764b7b2387ea24e8429223..cfa6ab1921988cbda87d318fdf324af5d456a3e8 100644 --- a/rna-seq.nf +++ b/rna-seq.nf @@ -266,7 +266,7 @@ process getData { echo -e "LOG: unzipped" >> ${repRID}.getData.log # bag fetch fastq's only and rename by repRID - if [ "${params.fastqsForce}" != "" ] + if [ "${params.endsForce}" != "" ] then echo -e "LOG: fetching replicate bdbag" >> ${repRID}.getData.log fastqCount=\$(sh ${script_bdbagFetch} \${replicate::-13} ${repRID}) @@ -302,7 +302,7 @@ if (fastqsForce != "") { fastqs_parseMetadata fastqs_fastqc } - fastqsForce.count().into{ + fastqsForce.count().into { fastqCount } } else {