From bdd506c7411721b8e133143d0b32a3ee8cff7a79 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 30 Nov 2020 20:08:40 -0600
Subject: [PATCH] Finalize CI unit uploadInputBag
---
.gitlab-ci.yml | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 695f595..9595c23 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -289,9 +289,8 @@ uploadInputBag:
- ln -sfn `readlink -e ./test_data/auth/credential.json` ./credential.json
- >
hatrac=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org ls /hatrac/resources/rnaseq/pipeline/input_bag/ | grep -o '/TEST$')
- echo &&
if [ -z "${hatrac}" ]; then
- singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org mkdir /hatrac/resources/rnaseq/pipeline/input_bag/TEST &&
+ singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org mkdir /hatrac/resources/rnaseq/pipeline/input_bag/TEST
echo /hatrac/resources/rnaseq/pipeline/input_bag/TEST created
else
echo /hatrac/resources/rnaseq/pipeline/input_bag/TEST already exists
--
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