diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 410aafb582422b102205f26a390c28bd77bc667b..960f6e4afd8a6d9981b0ad0cc6d7389d2b1ec2f1 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -655,7 +655,7 @@ override_inputBag: script: - hostname - ulimit -a - - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5F6 --inputBagForce ./test_data/bag/Q-Y5F6_inputBag_20201228.zip --upload false --ci true + - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5F6 --inputBagForce ./test_data/bag/Q-Y5F6_inputBag.zip --upload false --ci true - find . -type f -name "multiqc_data.json" -exec cp {} ./inputBagOverride_PE_multiqc_data.json \; artifacts: name: "$CI_JOB_NAME"