From bd2356402dd41c025b39561708391479b56e82e7 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 28 Dec 2020 15:41:44 -0600
Subject: [PATCH] Fix upload processed file ci unit cookie
---
.gitlab-ci.yml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index c623e51..32abb4a 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -359,11 +359,11 @@ uploadProcessedFile:
if [ "${exist}" != "[]" ]; then
rids=$(echo ${exist} | grep -o '\"RID\":\".\{7\}' | sed 's/^.\{7\}//') &&
for rid in ${rids}; do
- singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/deleteEntry.py -r ${rid} -t Processed_File -o staging.gudmap.org -c ${cookie}
+ singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/deleteEntry.py -r ${rid} -t Processed_File -o staging.gudmap.org -c ${cookie:9}
done
echo all old processed file RIDs deleted
fi
- singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-upload-cli --catalog 2 --token ${cookie} staging.gudmap.org ./deriva
+ singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-upload-cli --catalog 2 --token ${cookie:9} staging.gudmap.org ./deriva
echo test processed file uploaded
- mkdir test
- singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' bdbag test --archiver zip
--
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