From b507ecd747a80d522e62ea42a9d861efe735ad28 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 4 Feb 2021 20:46:08 -0600
Subject: [PATCH] Fix
---
workflow/rna-seq.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index e3690bf..555f711 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -2420,10 +2420,10 @@ process failPreExecutionRun {
errorDetails=\$(echo \$(errorDetails)${fastqReadError_details}"\\n")
elif [ ${fastqFileError} == true ]
then
- errorDetails=\$(echo \$(errorDetails)${fastqReadError_details}"\\n")
+ errorDetails=\$(echo \$(errorDetails)${fastqFileError_details}"\\n")
elif [ ${speciesError} == true ]
then
- errorDetails=\$(echo \$(errorDetails)${fastqReadError_details}"\\n")
+ errorDetails=\$(echo \$(errorDetails)${speciesError_details}"\\n")
fi
echo LOG: searching for workflow RID - BICF mRNA ${workflow.manifest.version} >> ${repRID}.failPreExecutionRun.log
--
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