From b272565da69ffd38cf83315a2431adddd19195f9 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 31 Jul 2020 09:32:39 -0500
Subject: [PATCH] Remove -bg nextflow flag in ci to test
---
.gitlab-ci.yml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index ed6baaf..0f96b50 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -132,7 +132,7 @@ integration_se:
script:
- hostname
- ulimit -a
- - nextflow -bg run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-1ZX4 -with-dag dag.png --ci true
+ - nextflow run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-1ZX4 -with-dag dag.png --ci true
- find . -type f -name "multiqc_data.json" -exec cp {} ./16-1ZX4_multiqc_data.json \;
artifacts:
name: "$CI_JOB_NAME"
@@ -147,7 +147,7 @@ integration_pe:
script:
- hostname
- ulimit -a
- - nextflow -bg run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5JA -with-dag dag.png --ci true
+ - nextflow run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5JA -with-dag dag.png --ci true
- find . -type f -name "multiqc_data.json" -exec cp {} ./Q-Y5JA_multiqc_data.json \;
artifacts:
name: "$CI_JOB_NAME"
--
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