From b25ebe4e4094bc6682bbaf2a5567bce5a9a3122a Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sun, 13 Sep 2020 23:16:43 -0500
Subject: [PATCH] Fix pulled ref mv
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 8f95d42..59a10d8 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -453,7 +453,7 @@ process getRefInfer {
filename=\$(echo \$(basename \${refURL}) | grep -oP '.*(?=:)')
deriva-hatrac-cli --host ${referenceBase} get \${refURL}
unzip \$(basename \${refURL})
- mv \${fName}/* .
+ mv \${fName}/data/* .
fi
echo -e "LOG: fetched" >> ${repRID}.${refName}.getRefInfer.log
--
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