diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 8f95d429dbe20d985d142348701d1fd8d9ab298b..59a10d825e760da1caa89f2ab4f8a71367be50f1 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -453,7 +453,7 @@ process getRefInfer { filename=\$(echo \$(basename \${refURL}) | grep -oP '.*(?=:)') deriva-hatrac-cli --host ${referenceBase} get \${refURL} unzip \$(basename \${refURL}) - mv \${fName}/* . + mv \${fName}/data/* . fi echo -e "LOG: fetched" >> ${repRID}.${refName}.getRefInfer.log