From b1e860c569ccc277aa9da13ab2142461c9d08eb6 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 27 Aug 2020 12:05:26 -0500
Subject: [PATCH] Update .gitlab-ci.yml

---
 .gitlab-ci.yml | 15 ++++++++++-----
 1 file changed, 10 insertions(+), 5 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 91d45be..f0e231b 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -214,7 +214,8 @@ outputBag:
 integration_se:
   stage: integration
   only: [merge_requests]
-  except: [/master/]
+  except:
+    - $CI_COMMIT_REF_NAME =~ /master/
   script:
   - hostname
   - ulimit -a
@@ -236,7 +237,8 @@ integration_se:
 integration_pe:
   stage: integration
   only: [merge_requests]
-  except: [/master/]
+  except:
+    - $CI_COMMIT_REF_NAME =~ /master/
   script:
   - hostname
   - ulimit -a
@@ -259,7 +261,8 @@ integration_pe:
 override_inputBag:
   stage: integration
   only: [merge_requests]
-  except: [/master/]
+  except:
+    - $CI_COMMIT_REF_NAME =~ /master/
   script:
   - hostname
   - ulimit -a
@@ -279,7 +282,8 @@ override_inputBag:
 override_fastq:
   stage: integration
   only: [merge_requests]
-  except: [/master/]
+  except:
+    - $CI_COMMIT_REF_NAME =~ /master/
   script:
   - hostname
   - ulimit -a
@@ -320,7 +324,8 @@ override_species:
 consistency:
   stage: consistency
   only: [merge_requests]
-  except: [/master/]
+  except:
+    - $CI_COMMIT_REF_NAME =~ /master/
   script:
   - grep -m 1 \"Assigned\":.[0-9] SE_multiqc_data.json | grep -oe '\([0-9.]*\)' > assignedSE.txt
   - grep -m 1 \"Assigned\":.[0-9] PE_multiqc_data.json | grep -oe '\([0-9.]*\)' > assignedPE.txt
-- 
GitLab