From b05be1eed3198bcc85463d4bffb993a4ffc316af Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 17 Dec 2020 19:21:48 -0600
Subject: [PATCH] Fix ci uploadQC
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index c50a61b..b41e230 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -333,7 +333,7 @@ uploadQC:
if [ "${exist}" != "[]" ]; then
rids=$(echo ${exist} | grep -o '\"RID\":\".\{7\}' | sed 's/^.\{7\}\/\/')
for rid in ${rids}; do
- singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/deleteEntry.py -r ${rid} -t mRNA_QC -o $staging.gudmap.org -c ${cookie} &&
+ singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/deleteEntry.py -r ${rid} -t mRNA_QC -o staging.gudmap.org -c ${cookie} &&
echo old mRNA QC RID deleted - ${rid}
done
echo all old mRNA QC RIDs deleted
--
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