From af4b5d0403d5285fd8494f7a3dee6ce614ec2acd Mon Sep 17 00:00:00 2001 From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu> Date: Sun, 13 Sep 2020 23:08:37 -0500 Subject: [PATCH] Move bed only on non ERCC --- workflow/rna-seq.nf | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index e35317f..8f95d42 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -454,7 +454,6 @@ process getRefInfer { deriva-hatrac-cli --host ${referenceBase} get \${refURL} unzip \$(basename \${refURL}) mv \${fName}/* . - mv bed ${refName}/ fi echo -e "LOG: fetched" >> ${repRID}.${refName}.getRefInfer.log @@ -465,6 +464,8 @@ process getRefInfer { rm -rf ${refName}/bed mkdir ${refName}/bed touch ${refName}/bed/temp + else + mv bed ${refName}/ fi """ } -- GitLab