From aecc04e6ccb35a9f96ff2516ad23a0a154bedf81 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 2 Mar 2021 12:58:30 -0600
Subject: [PATCH] Fix no download for fastqForce
---
rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/rna-seq.nf b/rna-seq.nf
index ea8c468..63133f4 100644
--- a/rna-seq.nf
+++ b/rna-seq.nf
@@ -266,7 +266,7 @@ process getData {
echo -e "LOG: unzipped" >> ${repRID}.getData.log
# bag fetch fastq's only and rename by repRID
- if [ "${params.endsForce}" == "" ]
+ if [ "${params.fastqsForce}" == "" ]
then
echo -e "LOG: fetching replicate bdbag" >> ${repRID}.getData.log
fastqCount=\$(sh ${script_bdbagFetch} \${replicate::-13} ${repRID})
--
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