diff --git a/rna-seq.nf b/rna-seq.nf index ea8c468adadaa650613f61e3b19342ee87abeb73..63133f4436431b6a9516222f4c1524dc6fad6a98 100644 --- a/rna-seq.nf +++ b/rna-seq.nf @@ -266,7 +266,7 @@ process getData { echo -e "LOG: unzipped" >> ${repRID}.getData.log # bag fetch fastq's only and rename by repRID - if [ "${params.endsForce}" == "" ] + if [ "${params.fastqsForce}" == "" ] then echo -e "LOG: fetching replicate bdbag" >> ${repRID}.getData.log fastqCount=\$(sh ${script_bdbagFetch} \${replicate::-13} ${repRID})