From accde9b761f916abda88ce0bcb6dc6b6f973a4b0 Mon Sep 17 00:00:00 2001 From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu> Date: Sun, 13 Sep 2020 11:13:53 -0500 Subject: [PATCH] Update deriva and python containers in config --- workflow/nextflow.config | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/workflow/nextflow.config b/workflow/nextflow.config index b166eae..218cf2a 100644 --- a/workflow/nextflow.config +++ b/workflow/nextflow.config @@ -26,13 +26,13 @@ process { container = 'bicf/gudmaprbkfilexfer:2.0.1_indev' } withName: parseMetadata { - container = 'bicf/python3:2.0.1_indev' + container = 'gudmaprbk/python3:1.0.0' } withName: trimData { container = 'bicf/trimgalore:1.1' } withName: getRefInfer { - container = 'bicf/awscli:1.1' + container = 'gudmaprbk/deriva1.3:1.0.0' } withName: downsampleData { container = 'bicf/seqtk:2.0.1_indev' @@ -44,7 +44,7 @@ process { container = 'bicf/rseqc3.0:2.0.1_indev' } withName: getRef { - container = 'bicf/awscli:1.1' + container = 'gudmaprbk/deriva1.3:1.0.0' } withName: alignData { container = 'bicf/gudmaprbkaligner:2.0.1_indev' -- GitLab