From accde9b761f916abda88ce0bcb6dc6b6f973a4b0 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sun, 13 Sep 2020 11:13:53 -0500
Subject: [PATCH] Update deriva and python containers in config

---
 workflow/nextflow.config | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/workflow/nextflow.config b/workflow/nextflow.config
index b166eae..218cf2a 100644
--- a/workflow/nextflow.config
+++ b/workflow/nextflow.config
@@ -26,13 +26,13 @@ process {
     container = 'bicf/gudmaprbkfilexfer:2.0.1_indev'
   }
   withName: parseMetadata {
-    container = 'bicf/python3:2.0.1_indev'
+    container = 'gudmaprbk/python3:1.0.0'
   }
   withName: trimData {
     container = 'bicf/trimgalore:1.1'
   }
   withName: getRefInfer {
-    container = 'bicf/awscli:1.1'
+    container = 'gudmaprbk/deriva1.3:1.0.0'
   }
   withName: downsampleData {
     container = 'bicf/seqtk:2.0.1_indev'
@@ -44,7 +44,7 @@ process {
     container = 'bicf/rseqc3.0:2.0.1_indev'
   }
   withName: getRef {
-    container = 'bicf/awscli:1.1'
+    container = 'gudmaprbk/deriva1.3:1.0.0'
   }
   withName: alignData {
     container = 'bicf/gudmaprbkaligner:2.0.1_indev'
-- 
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