From aa74f9f8fc4c5db889b58fdf394b7b6e4dbf2a98 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 13 Aug 2020 19:58:40 -0500
Subject: [PATCH] Add resume to by study
---
workflow/scripts/splitStudy.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/scripts/splitStudy.sh b/workflow/scripts/splitStudy.sh
index 1f82af6..bbba75b 100644
--- a/workflow/scripts/splitStudy.sh
+++ b/workflow/scripts/splitStudy.sh
@@ -14,7 +14,7 @@ python3 ./workflow/scripts/splitStudy.py -s $1
# run pipeline on replicate RIDs in parallel
module load nextflow/20.01.0
module load singularity/3.5.3
-while read repRID; do echo ${repRID}; sleep 15; done < "$1_studyRID.csv" | xargs -P 5 -I {} nextflow -q run workflow/rna-seq.nf --repRID {}
+while read repRID; do echo ${repRID}; sleep 15; done < "$1_studyRID.csv" | xargs -P 5 -I {} nextflow -q run workflow/rna-seq.nf --repRID {} -resume
# cleanup study RID files
rm $1_studyRID.json
--
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