From a6b4db92fd8848b6ce75a5ab85f864b8ec18b714 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 2 Mar 2021 21:19:23 -0600
Subject: [PATCH] Try to not error if images already there
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 756d280..e8e384f 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -33,7 +33,7 @@ img_cache:
stage: singularity
script:
- export -p | grep SINGULARITY_CACHEDIR
- - cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq | xargs -P 10 -I {} singularity pull --dir ${dir} 'docker://'{} 2>&1
+ - cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq | xargs -P 10 -I {} singularity pull --dir ${dir} 'docker://'{} || true
collect:
stage: versions
--
GitLab