diff --git a/workflow/tests/test_alignReads.py b/workflow/tests/test_alignReads.py
index 889ee0511692b5024084de2463d7a50e298f714e..66f6a26237ba32d4df56945d90cff79d067f4aef 100644
--- a/workflow/tests/test_alignReads.py
+++ b/workflow/tests/test_alignReads.py
@@ -6,9 +6,9 @@ import os
 import utils
 
 data_output_path = os.path.dirname(os.path.abspath(__file__)) + \
-	'/../../output/aligned'
+	'/../../'
 logs_output_path = os.path.dirname(os.path.abspath(__file__)) + \
-	'/../../output/Logs'
+	'/../../'
 
 @pytest.mark.alignData
 def test_alignData_se():