From a1a894c939892a800da79d9e829f627eba0b2b8f Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 29 Dec 2020 10:43:47 -0600
Subject: [PATCH] Fix mouse ref tests
---
.gitlab-ci.yml | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 960f6e4..3ebe6e5 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -479,7 +479,7 @@ mouse_dev:
- ln -sfn `readlink -e ./test_data/auth/cookies.txt` ~/.bdbag/deriva-cookies.txt
- referenceBase=dev.gudmap.org
- refName=GRCm
- - references=$(echo ${referenceBase}/${refName}${refHuVersion})
+ - references=$(echo ${referenceBase}/${refName}${refMuVersion})
- GRCv=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f1)
- GRCp=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f2)
- GENCODE=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f3)
@@ -530,7 +530,7 @@ mouse_staging:
- referenceBase=staging.gudmap.org
- refName=GRCm
- refHuVersion=38.p6.vM22
- - references=$(echo ${referenceBase}/${refName}${refHuVersion})
+ - references=$(echo ${referenceBase}/${refName}${refMuVersion})
- GRCv=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f1)
- GRCp=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f2)
- GENCODE=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f3)
@@ -581,7 +581,7 @@ mouse_prod:
- referenceBase=www.gudmap.org
- refName=GRCm
- refHuVersion=38.p6.vM22
- - references=$(echo ${referenceBase}/${refName}${refHuVersion})
+ - references=$(echo ${referenceBase}/${refName}${refMuVersion})
- GRCv=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f1)
- GRCp=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f2)
- GENCODE=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f3)
--
GitLab