diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 960f6e4afd8a6d9981b0ad0cc6d7389d2b1ec2f1..3ebe6e56b553448beae7398d89643a1511650999 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -479,7 +479,7 @@ mouse_dev: - ln -sfn `readlink -e ./test_data/auth/cookies.txt` ~/.bdbag/deriva-cookies.txt - referenceBase=dev.gudmap.org - refName=GRCm - - references=$(echo ${referenceBase}/${refName}${refHuVersion}) + - references=$(echo ${referenceBase}/${refName}${refMuVersion}) - GRCv=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f1) - GRCp=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f2) - GENCODE=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f3) @@ -530,7 +530,7 @@ mouse_staging: - referenceBase=staging.gudmap.org - refName=GRCm - refHuVersion=38.p6.vM22 - - references=$(echo ${referenceBase}/${refName}${refHuVersion}) + - references=$(echo ${referenceBase}/${refName}${refMuVersion}) - GRCv=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f1) - GRCp=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f2) - GENCODE=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f3) @@ -581,7 +581,7 @@ mouse_prod: - referenceBase=www.gudmap.org - refName=GRCm - refHuVersion=38.p6.vM22 - - references=$(echo ${referenceBase}/${refName}${refHuVersion}) + - references=$(echo ${referenceBase}/${refName}${refMuVersion}) - GRCv=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f1) - GRCp=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f2) - GENCODE=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f3)