diff --git a/workflow/scripts/parse_meta.py b/workflow/scripts/parse_meta.py index b5379bb189ec5f88c0353fa54e2fdb163d7d22ba..0b15f07d15bde582e0bd4de2d4be3d8fa12b9265 100644 --- a/workflow/scripts/parse_meta.py +++ b/workflow/scripts/parse_meta.py @@ -63,12 +63,7 @@ def main(): # Get strandedness metadata from 'Experiment Settings.csv' if (args.parameter == "stranded"): - if (metaFile.Has_Strand_Specific_Information.unique() == "yes"): - stranded = "stranded" - elif (metaFile.Has_Strand_Specific_Information.unique() == "no"): - stranded = "unstranded" - else: - stranded = metaFile.Has_Strand_Specific_Information.unique()[0] + stranded = metaFile.Stranded.unique()[0] print(stranded) # Get spike-in metadata from 'Experiment Settings.csv' @@ -78,12 +73,7 @@ def main(): # Get species metadata from 'Experiment.csv' if (args.parameter == "species"): - if (metaFile.Species.unique() == "Mus musculus"): - species = "Mus musculus" - elif (metaFile.Species.unique() == "Homo sapiens"): - species = "Homo sapiens" - else: - species = metaFile.Species.unique()[0] + species = metaFile.Species.unique()[0] print(species) # Get read length metadata from 'Experiment Settings.csv'