From a135846781a72e5715a66dfe8130e01235f8f1d9 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 29 Dec 2020 13:34:15 -0600
Subject: [PATCH] Add date tail for test input bag
---
.gitlab-ci.yml | 2 +-
test_data/createTestData.sh | 4 ++--
2 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 3d1880a..6ca72df 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -655,7 +655,7 @@ override_inputBag:
script:
- hostname
- ulimit -a
- - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5F6 --inputBagForce ./test_data/bag/Q-Y5F6_inputBag.zip --upload false --ci true
+ - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5F6 --inputBagForce ./test_data/bag/Q-Y5F6_inputBag_xxxxxxxx.zip --upload false --ci true
- find . -type f -name "multiqc_data.json" -exec cp {} ./inputBagOverride_PE_multiqc_data.json \;
artifacts:
name: "$CI_JOB_NAME"
diff --git a/test_data/createTestData.sh b/test_data/createTestData.sh
index 345d494..8f5cebc 100644
--- a/test_data/createTestData.sh
+++ b/test_data/createTestData.sh
@@ -13,10 +13,10 @@ ln -sfn ./test_data/auth/credential.json ~/.deriva/credential.json
mkdir -p ./NEW_test_data/bag
singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-download-cli staging.gudmap.org --catalog 2 ../workflow/conf/Replicate_For_Input_Bag.json . rid=Q-Y5F6
-cp Q-Y5F6_inputBag.zip ./NEW_test_data/bag/Q-Y5F6_inputBag.zip
+cp Q-Y5F6_inputBag.zip ./NEW_test_data/bag/Q-Y5F6_inputBag_xxxxxxxx.zip
mkdir -p ./NEW_test_data/fastq
-unzip ./NEW_test_data/bag/Q-Y5F6_inputBag.zip
+unzip ./NEW_test_data/bag/Q-Y5F6_inputBag_xxxxxxxx.zip
singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' bash ../workflow/scripts/bdbagFetch.sh Q-Y5F6_inputBag Q-Y5F6
cp Q-Y5F6.R1.fastq.gz ./NEW_test_data/fastq/Q-Y5F6.R1.fastq.gz
cp Q-Y5F6.R2.fastq.gz ./NEW_test_data/fastq/Q-Y5F6.R2.fastq.gz
--
GitLab