From a087bb4e4d93c589d8b5125c72d9ce6f600a4106 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 2 Mar 2021 23:46:43 -0600
Subject: [PATCH] Not stop after the first 3 images
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 58ab99d..7977f79 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -33,7 +33,7 @@ img_cache:
stage: singularity
script:
- mkdir -p ${dir}cache/
- - cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq | xargs -P 3 -I {} -c "singularity pull --dir ${dir} 'docker://'{} || true"
+ - cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq | xargs -P 3 -I {} bash -c "singularity pull --dir ${dir} 'docker://'{} || true"
- wait
- echo images cached
--
GitLab