diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 58ab99d88a90f3339eef066f1040ba68a416d58e..7977f7907e5dcf05764405de2bcb56654b14446c 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -33,7 +33,7 @@ img_cache: stage: singularity script: - mkdir -p ${dir}cache/ - - cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq | xargs -P 3 -I {} -c "singularity pull --dir ${dir} 'docker://'{} || true" + - cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq | xargs -P 3 -I {} bash -c "singularity pull --dir ${dir} 'docker://'{} || true" - wait - echo images cached