diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 2327f2eb3d2435fb595922e29acb106fc7b34965..1c6691760f42da9d2d7d194272f2da6bf85af9b1 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -72,7 +72,7 @@ dedupData: makeBigWig stage: unit script: - - singularity run 'docker://bicf/deeptools3.3:2.0.0' bamCoverage -b ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam -o ./test_data/bam/small/Q-Y5JA_1M.se.bw + - singularity run 'docker://bicf/deeptools3.3:2.0.0' bamCoverage -p `nproc` -b ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam -o ./test_data/bam/small/Q-Y5JA_1M.se.bw - pytest -m makeBigWig fastqc: