diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index eb96c17b5924f52d3b2d2eed2b82fd211a4a2678..0a25a449ba1030f3dd68e367f7e8f482f9f54ea2 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -294,9 +294,9 @@ uploadInputBag: fi - echo THIS IS A TEST FILE > test.txt - > - md5=$(md5sum ./test.txt | awk '{ print $1 }') - size=$(wc -c < ./test.txt) - exist=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' curl -s https://dev.gudmap.org/ermrest/catalog/2/entity/RNASeq:Input_Bag/File_MD5=${md5}) + md5=$(md5sum ./test.txt | awk '{ print $1 }') && + size=$(wc -c < ./test.txt) && + exist=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' curl -s https://dev.gudmap.org/ermrest/catalog/2/entity/RNASeq:Input_Bag/File_MD5=${md5}) && if [ "${exist}" == "[]" ]; then cookie=$(cat credential.json | grep -A 1 '\"dev.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') cookie=${cookie:11:-1}