From 9c9d419159d0d6fb5f82032dc4f80a6f8c93a4c8 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 19 Jan 2021 23:12:09 -0600
Subject: [PATCH] Fix if then
---
workflow/rna-seq.nf | 1 +
1 file changed, 1 insertion(+)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 3178a33..f890b82 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -345,6 +345,7 @@ process parseMetadata {
# ganually get endness
if [ "${fastqCount}" == "1" ]
+ then
endsManual="se"
else
endsManual="pe"
--
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