diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index fe5237705821e443b064bb05be3dbe77d3d86a81..cb0ca674288b80a437ed35a5f4790a9a79bde122 100755 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -8,7 +8,6 @@ params.outDir = "${baseDir}/../output" // Parse input variables deriva = file(params.deriva) -deriva.copyTo('~/.bdbag/deriva-cookies.txt') bdbag = Channel .fromPath(params.bdbag) .ifEmpty { exit 1, "bdbag zip file not found: ${params.bdbag}" } @@ -35,6 +34,8 @@ process splitData { """ hostname ulimit -a + ln -sf `readlink -e ${deriva}` ~/.bdbag/deriva-cookies.txt + echo LOG: deriva cookie linked study=`echo "${bdbag}" | cut -d'.' -f1` echo LOG: \${study} unzip ${bdbag}