diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index d57b8e087a2140e7a0f235f6efa16ee1d38da63f..af5dc1a460421a723f2315c76a08017008021231 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -840,7 +840,7 @@ process inferMetadata { fi fi - if [ !\${speciesError} ] && [ "${speciesForce}" = "" ] + if !\${speciesError} && [ "${speciesForce}" = "" ] then # infer experimental setting from dedup bam echo -e "LOG: infer experimental setting from dedup bam" >> ${repRID}.inferMetadata.log