From 9aa7927c8f8a756197ece23d7a9975a4c0463bcb Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 2 Mar 2021 23:03:50 -0600
Subject: [PATCH] Set permissions for cached dir
---
.gitlab-ci.yml | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 56db565..5a8c455 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -32,8 +32,9 @@ stages:
img_cache:
stage: singularity
script:
- - export -p | grep SINGULARITY_CACHEDIR
+ - chmod 0700 ${dir}
- cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq | xargs -P 10 -I {} singularity pull --dir ${dir} 'docker://'{} || true
+ - chmod 775 ${dir}
- chmod 775 ${dir}*.sif
collect:
--
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