diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 56db5659e637e09aeb0fd2e9c158595b1305a99b..5a8c45562f745fdce85231aefea58058b1c70639 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -32,8 +32,9 @@ stages: img_cache: stage: singularity script: - - export -p | grep SINGULARITY_CACHEDIR + - chmod 0700 ${dir} - cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq | xargs -P 10 -I {} singularity pull --dir ${dir} 'docker://'{} || true + - chmod 775 ${dir} - chmod 775 ${dir}*.sif collect: