From 984d08108c9db2487c541729d6e65fe3378d9d0d Mon Sep 17 00:00:00 2001 From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu> Date: Wed, 21 Jul 2021 17:31:20 -0500 Subject: [PATCH] Fix uploadExecutionRun and uploadQC CI exist --- .gitlab-ci.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 4ae188a..9206432 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -452,7 +452,7 @@ uploadExecutionRun: - echo ${dir}${derivaImg}_${derivaVar}.sif - ln -sfn `readlink -e ./test_data/auth/credential.json` ./credential.json - > - exist=$(singularity run ${dir}${derivaImg}_${derivaVar}.sif curl -s https://staging.gudmap.org/ermrest/catalog/2/entity/RNASeq:Execution_Run/Replicate=17-BTFJ) && + exist=$(singularity run ${dir}${derivaImg}_${derivaVar}.sif curl -s https://staging.gudmap.org/ermrest/catalog/2/entity/RNASeq:Execution_Run/Replicate=${ci_staging_rid_test_rep}) && cookie=$(cat credential.json | grep -A 1 '\"staging.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') && cookie=${cookie:11:-1} && if [ "${exist}" == "[]" ]; then @@ -479,7 +479,7 @@ uploadQC: - echo ${dir}${derivaImg}_${derivaVar}.sif - ln -sfn `readlink -e ./test_data/auth/credential.json` ./credential.json - > - exist=$(singularity run ${dir}${derivaImg}_${derivaVar}.sif curl -s https://staging.gudmap.org/ermrest/catalog/2/entity/RNASeq:mRNA_QC/Replicate=17-BTFJ) && + exist=$(singularity run ${dir}${derivaImg}_${derivaVar}.sif curl -s https://staging.gudmap.org/ermrest/catalog/2/entity/RNASeq:mRNA_QC/Replicate=${ci_staging_rid_test_rep}) && cookie=$(cat credential.json | grep -A 1 '\"staging.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') && cookie=${cookie:11:-1} && if [ "${exist}" != "[]" ]; then -- GitLab