From 97f6944209f36c12964567102c6a8ce4597eccd9 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 13 Aug 2020 10:12:28 -0500
Subject: [PATCH] Increase delay between study initiated runs to 30s
---
README.md | 4 ++--
workflow/scripts/splitStudy.sh | 2 +-
2 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/README.md b/README.md
index 399f0da..a4b6f56 100644
--- a/README.md
+++ b/README.md
@@ -62,7 +62,7 @@ To run a set of replicates from study RID:
------------------------------------------
Run in repo root dir:
* `sh workflow/scripts/splitStudy.sh [studyRID]`
-It will run in parallel in batches of 25 replicatesRID with 10 second delays between launches.
+It will run in parallel in batches of 25 replicatesRID with 30 second delays between launches.
@@ -115,4 +115,4 @@ Please cite in publications: Pipeline was developed by BICF from funding provide
Pipeline Directed Acyclic Graph
-------------------------------
-
+
\ No newline at end of file
diff --git a/workflow/scripts/splitStudy.sh b/workflow/scripts/splitStudy.sh
index be4259c..bade44b 100644
--- a/workflow/scripts/splitStudy.sh
+++ b/workflow/scripts/splitStudy.sh
@@ -10,7 +10,7 @@ python3 ./workflow/scripts/splitStudy.py -s $1
# run pipeline on replicate RIDs in parallel
module load nextflow/20.01.0
module load singularity/3.5.3
-while read repRID; do echo ${repRID}; sleep 10; done < "$1_studyRID.csv" | xargs -P 25 -I {} nextflow -q run workflow/rna-seq.nf --repRID {}
+while read repRID; do echo ${repRID}; sleep 30; done < "$1_studyRID.csv" | xargs -P 25 -I {} nextflow -q run workflow/rna-seq.nf --repRID {}
# cleanup study RID files
rm $1_studyRID.json
--
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