From 957b7679435297a5fcd6c2643946a8e311416155 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 20 Jan 2021 00:50:05 -0600
Subject: [PATCH] Fix no fastq error detail
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 9e8f206..1295e5c 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -386,7 +386,7 @@ process parseMetadata {
elif [ "${fastqCount}" -eq "0" ]
then
fastqCountError=true
- fastqCountError_details="**No valid fastqs detected (may not match .R{1,2}.fastq.gz convention)**"
+ fastqCountError_details="**No valid fastqs detected (may not match .R{12}.fastq.gz convention)**"
elif [ "\${endsMeta}" == "se" ] && [ "${fastqCount}" -ne "1" ]
then
fastqCountError=true
--
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