diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index b0304cd02e493d6010c837c6d7bad762fd35a1d6..3c76ede7bc555e39787af47c145ff8793a85a0d7 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -190,7 +190,7 @@ override_fastq: stage: integration script: - hostname - - ulimit -a + - ulimit -a - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5JA --fastqForce 'test_data/fastq/small/Q-Y5F6_1M.R{1,2}.fastq.gz' --ci true - find . -type f -name "multiqc_data.json" -exec cp {} ./fastqOverride_PE_multiqc_data.json \; artifacts: