From 92441d0e42277701329d04fc6be45703dc8329db Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 5 Jan 2021 16:17:39 -0600
Subject: [PATCH] Fix fail pre execution run
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index b223f2e..6d2d57e 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -2088,7 +2088,7 @@ process failPreExecutionRun {
errorDetails=\$(echo ${fastqCountError_details}"\\n")
elif [ ${fastqReadError} == true ]
then
- errorDetails=\$(echo \$(errorDetails)${pipelineError}"\\n")
+ errorDetails=\$(echo \$(errorDetails)${fastqReadError_details}"\\n")
fi
echo LOG: searching for workflow RID - BICF mRNA ${workflow.manifest.version} >> ${repRID}.failPreExecutionRun.log
--
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