From 8dd59f38fffff25d947b004b764949baafc575c7 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 7 Aug 2020 10:55:13 -0500
Subject: [PATCH] Add rounding to numbers in multiqc table
---
workflow/conf/multiqc_config.yaml | 1 +
workflow/rna-seq.nf | 2 +-
2 files changed, 2 insertions(+), 1 deletion(-)
diff --git a/workflow/conf/multiqc_config.yaml b/workflow/conf/multiqc_config.yaml
index 5e39335..db6a335 100644
--- a/workflow/conf/multiqc_config.yaml
+++ b/workflow/conf/multiqc_config.yaml
@@ -74,6 +74,7 @@ custom_data:
plot_type: 'table'
pconfig:
id: 'meta'
+ format: '{:,.0f}'
headers:
Source
Species
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 7dd69e5..efeb0f1 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -239,7 +239,7 @@ process parseMetadata {
# get read length metadata
readLength=\$(python3 ${script_parseMeta} -r ${repRID} -m "${experimentSettings}" -p readLength)
- if [ "\${readLength}" == "nan"]
+ if [ "\${readLength}" = "nan"]
then
readLength="NA"
fi
--
GitLab