From 8d3d9deaca007f26e3a9402ce2c47872782dee90 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 14 Jul 2020 20:11:49 -0500
Subject: [PATCH] Return background run to integratiion
---
.gitlab-ci.yml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 0e8de54..a4e74a3 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -129,14 +129,14 @@ integration_se:
script:
- hostname
- ulimit -a
- - nextflow run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-1ZX4 --ci true
+ - nextflow -bg run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-1ZX4 --ci true
integration_pe:
stage: integration
script:
- hostname
- ulimit -a
- - nextflow run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5JA -with-dag dag.png --ci true
+ - nextflow -bg run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5JA -with-dag dag.png --ci true
artifacts:
name: "$CI_JOB_NAME"
when: always
--
GitLab