diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index efc6ece76915c999518d0756423e50f3e72c25a7..a1c2c250109f496f9d20a37ebea466f1630139b2 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -89,7 +89,8 @@ fastqc:
 inferMetadata:
   stage: unit
   script:
-  - singularity run 'docker://bicf/rseqc3.0:2.0.0' tin.py -i ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam -r /project/BICF/BICF_Core/shared/gudmap/references/GRCh38.p12.v31/bed/genome.bed
+  - for i in {"chrNC_000001.11","chrNC_000002.12","chrNC_000019.10"}; do
+    echo " tin.py -i tin.py -i /test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.${i}.bam -r /project/BICF/BICF_Core/shared/gudmap/references/GRCh38.p12.v31/bed/genome.bed; cat Q-Y5JA_1M.se.sorted.deduped.${i}.tin.xls | tr -s \"\\w\" \"\\t\" | grep -P \"\\t${i}\\t\"" | singularity run 'docker://bicf/rseqc3.0:2.0.0' parallel -j `nproc` -k > Q-Y5JA_1M.se.sorted.deduped.tin.xls
   - pytest -m inferMetadata
 
 integration_se: