From 8c7d30a6667043931075e27af55dfb6768b77064 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 11 Jan 2021 09:18:38 -0600
Subject: [PATCH] Change consistency check to 5%
---
CHANGELOG.md | 2 +-
workflow/tests/test_consistency.py | 14 ++++++++------
2 files changed, 9 insertions(+), 7 deletions(-)
diff --git a/CHANGELOG.md b/CHANGELOG.md
index fb17e57..d8b94c0 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -4,7 +4,7 @@
* Output median TIN to mRNA_QC table
**Background**
-* Change consistency test to check if +/- 1% of standard
+* Change consistency test to check if +/- 5% of standard
* Change tool version checker for badges to use latest tag
*Known Bugs*
diff --git a/workflow/tests/test_consistency.py b/workflow/tests/test_consistency.py
index 153f182..aa04f19 100644
--- a/workflow/tests/test_consistency.py
+++ b/workflow/tests/test_consistency.py
@@ -20,9 +20,10 @@ def test_consistencySE():
assigned_reads_json = json.load(f)
assigned_reads = assigned_reads_json['report_general_stats_data'][4]['16-1ZX4_sorted']['Assigned']
baseline = 7746121
- baseline_hi = baseline+(baseline*0.01)
- baseline_lo = baseline-(baseline*0.01)
- self.assertTrue ( baseline_lo <= assigned_reads <= baseline_hi )
+ baseline_hi = baseline+(baseline*0.05)
+ baseline_lo = baseline-(baseline*0.05)
+ assert (assigned_reads >= baseline_lo)
+ assert (assigned_reads <= baseline_hi)
@pytest.mark.consistencyPE
@@ -35,6 +36,7 @@ def test_consistencyPE():
assigned_reads_json = json.load(f)
assigned_reads = assigned_reads_json['report_general_stats_data'][4]['Q-Y5JA_sorted']['Assigned']
baseline = 2596053
- baseline_hi = baseline+(baseline*0.01)
- baseline_lo = baseline-(baseline*0.01)
- self.assertTrue ( baseline_lo <= assigned_reads <= baseline_hi )
+ baseline_hi = baseline+(baseline*0.05)
+ baseline_lo = baseline-(baseline*0.05)
+ assert (assigned_reads >= baseline_lo)
+ assert (assigned_reads <= baseline_hi)
--
GitLab