diff --git a/CHANGELOG.md b/CHANGELOG.md index fb17e5777c467b3a2efbcef27d071e3c4e9bb74c..d8b94c07df2937c6593522732d164b60b832b3f9 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,7 +4,7 @@ * Output median TIN to mRNA_QC table **Background** -* Change consistency test to check if +/- 1% of standard +* Change consistency test to check if +/- 5% of standard * Change tool version checker for badges to use latest tag *Known Bugs* diff --git a/workflow/tests/test_consistency.py b/workflow/tests/test_consistency.py index 153f1829b456fce6a06c70d5e1163d6ab4e2334d..aa04f19bd23e3749532b87b598179b8f98b2218b 100644 --- a/workflow/tests/test_consistency.py +++ b/workflow/tests/test_consistency.py @@ -20,9 +20,10 @@ def test_consistencySE(): assigned_reads_json = json.load(f) assigned_reads = assigned_reads_json['report_general_stats_data'][4]['16-1ZX4_sorted']['Assigned'] baseline = 7746121 - baseline_hi = baseline+(baseline*0.01) - baseline_lo = baseline-(baseline*0.01) - self.assertTrue ( baseline_lo <= assigned_reads <= baseline_hi ) + baseline_hi = baseline+(baseline*0.05) + baseline_lo = baseline-(baseline*0.05) + assert (assigned_reads >= baseline_lo) + assert (assigned_reads <= baseline_hi) @pytest.mark.consistencyPE @@ -35,6 +36,7 @@ def test_consistencyPE(): assigned_reads_json = json.load(f) assigned_reads = assigned_reads_json['report_general_stats_data'][4]['Q-Y5JA_sorted']['Assigned'] baseline = 2596053 - baseline_hi = baseline+(baseline*0.01) - baseline_lo = baseline-(baseline*0.01) - self.assertTrue ( baseline_lo <= assigned_reads <= baseline_hi ) + baseline_hi = baseline+(baseline*0.05) + baseline_lo = baseline-(baseline*0.05) + assert (assigned_reads >= baseline_lo) + assert (assigned_reads <= baseline_hi)