From 8a1299d46c4b6aaa6e91d86615aa55d2b86434f8 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 27 Jan 2021 17:34:28 -0600
Subject: [PATCH] Fix aggrQC if brackets
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 69c3a2d..d1d745c 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -1976,7 +1976,7 @@ process aggrQC {
ulimit -a >> ${repRID}.aggrQC.log
# make run table
- if [ "${params.inputBagForce}" == "" ] && [ "${params.fastqsForce}" == "" ] && [ "${params.speciesForce}" == "" && [ "${params.strandedForce}" == "" && [ "${params.spikeForce}" == "" ]
+ if [ "${params.inputBagForce}" == "" ] && [ "${params.fastqsForce}" == "" ] && [ "${params.speciesForce}" == "" ] && [ "${params.strandedForce}" == "" ] && [ "${params.spikeForce}" == "" ]
then
input="default"
else
--
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