diff --git a/workflow/scripts/upload_execution_run.py b/workflow/scripts/upload_execution_run.py index 5fd0cf4a35bdd8b107261e18472c55de48886ae8..7ba9ce26085e51d18bdd45b0cbfd9122f3f75923 100644 --- a/workflow/scripts/upload_execution_run.py +++ b/workflow/scripts/upload_execution_run.py @@ -41,7 +41,7 @@ def main(hostname, catalog_number, credential): "Execution_Status": args.status, "Execution_Status_Detail": args.statusDetail.replace('\\n','\n') } - entities = run_table.insert([run_data]) + entities = run_table.insert([run_data], nondefaults=["RCB", "RMB"]) rid = entities[0]["RID"] else: run_data = { diff --git a/workflow/scripts/upload_input_bag.py b/workflow/scripts/upload_input_bag.py index 434129d2a821b59aab99c94bc618a8424c4c8196..d2deca2c38b5ec6544bfe9960eb8774bcfd76b49 100644 --- a/workflow/scripts/upload_input_bag.py +++ b/workflow/scripts/upload_input_bag.py @@ -39,7 +39,7 @@ def main(hostname, catalog_number, credential): "Bag_Type": "Replicate_Input_Seq" } - entities = inputBag_table.insert([inputBag_data]) + entities = inputBag_table.insert([inputBag_data], nondefaults=["RCB", "RMB"]) rid = entities[0]["RID"] print(rid) diff --git a/workflow/scripts/upload_output_bag.py b/workflow/scripts/upload_output_bag.py index a4ac6307c194d65f4729a0f37ff380eba1c57e65..1dce763b60bee174b8da8aee60614ac5cbb31263 100644 --- a/workflow/scripts/upload_output_bag.py +++ b/workflow/scripts/upload_output_bag.py @@ -42,7 +42,7 @@ def main(hostname, catalog_number, credential): "Notes": args.notes, "Bag_Type": "mRNA_Replicate_Analysis" } - entities = outputBag_table.insert([outputBag_data]) + entities = outputBag_table.insert([outputBag_data], nondefaults=["RCB", "RMB"]) rid = entities[0]["RID"] else: @@ -50,7 +50,7 @@ def main(hostname, catalog_number, credential): "RID": args.update, "Execution_Run": args.executionRunRID } - entities = outputBag_table.insert([outputBag_data]) + entities = outputBag_table.insert([outputBag_data], nondefaults=["RCB", "RMB"]) rid = entities[0]["RID"] print(rid) diff --git a/workflow/scripts/upload_qc.py b/workflow/scripts/upload_qc.py index 3c51bc8902a0dbd6a7b64ca0cdaef056b18020c4..ce12fb63458552fdc194967420c2e999864264a5 100644 --- a/workflow/scripts/upload_qc.py +++ b/workflow/scripts/upload_qc.py @@ -45,14 +45,14 @@ def main(hostname, catalog_number, credential): "Median_TIN": args.tin, "Notes": args.notes } - entities = run_table.insert([run_data]) + entities = run_table.insert([run_data], nondefaults=["RCB", "RMB"]) rid = entities[0]["RID"] elif args.update == "E": run_data = { "Execution_Run": args.executionRunRID, "Replicate": args.repRID } - entities = run_table.insert([run_data]) + entities = run_table.insert([run_data], nondefaults=["RCB", "RMB"]) rid = entities[0]["RID"] else: run_data = {