From 862e319e73a68d34ef7c4d0981a6ceec864c80e0 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 2 Apr 2020 10:06:33 -0500
Subject: [PATCH] Update rna-seq.nf
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index e9cfc90..5fa5bd1 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -487,6 +487,6 @@ process inferMetadata {
done | parallel -j `nproc` -k > ${repRID}.sorted.deduped.tin.xls 2>>${repRID}.rseqc.err
# write infered metadata to file
- echo -e "\${endness}','\${stranded}','\${strategy}','\${percentF}','\${percentR}','\${fail}" > infer.csv
+ echo -e \${endness},\${stranded},\${strategy},\${percentF},\${percentR},\${fail} > infer.csv
"""
}
--
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