From 850d99f8e0c642eaee7b992ffe4a67de47ab1d1a Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 3 Feb 2020 23:06:09 -0600
Subject: [PATCH] Add resources to AWS configs
---
workflow/conf/aws_ondemand.config | 7 +++++--
workflow/conf/aws_spot.config | 7 +++++--
2 files changed, 10 insertions(+), 4 deletions(-)
diff --git a/workflow/conf/aws_ondemand.config b/workflow/conf/aws_ondemand.config
index ca23b6c..0c8b6ff 100755
--- a/workflow/conf/aws_ondemand.config
+++ b/workflow/conf/aws_ondemand.config
@@ -11,7 +11,7 @@ process {
executor = 'awsbatch'
queue = 'highpriority-3278a8b0-1fc8-11ea-b1ac-021e2396e2cc'
cpus = 1
- memory = '1 GB'
+ memory = '2 GB'
withName:parseMetadata {
cpus = 5
@@ -25,10 +25,13 @@ process {
}
withName:alignData {
cpus = 50
- memory = '10 GB'
+ memory = '5 GB'
}
withName:dedupData {
cpus = 2
memory = '20 GB'
}
+ withName:fastqc {
+ memory = '5 GB'
+ }
}
\ No newline at end of file
diff --git a/workflow/conf/aws_spot.config b/workflow/conf/aws_spot.config
index e044756..4708298 100755
--- a/workflow/conf/aws_spot.config
+++ b/workflow/conf/aws_spot.config
@@ -11,7 +11,7 @@ process {
executor = 'awsbatch'
queue = 'default-3278a8b0-1fc8-11ea-b1ac-021e2396e2cc'
cpus = 1
- memory = '1 GB'
+ memory = '2 GB'
withName:parseMetadata {
cpus = 5
@@ -25,10 +25,13 @@ process {
}
withName:alignData {
cpus = 50
- memory = '10 GB'
+ memory = '5 GB'
}
withName:dedupData {
cpus = 2
memory = '20 GB'
}
+ withName:fastq {
+ memory = '5 GB'
+ }
}
--
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